Sequences producing significant Alignments

Results from a genetic query I ran on Gardasil's 530 letter HPV16-L1 Protein, March 15, 2013

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Max ident	Accession
1	RecName: Full=ADP-ribosylation factor-like protein 2-binding protein-like protein; Short=ARF-like 2-binding protein-like protein; Short=ARL2BP-like protein	30.0	30.0	6%	2.0	44%	A8MYR8.1
2	RecName: Full=Killer cell lectin-like receptor subfamily G member 1; AltName: Full=C-type lectin domain family 15 member A; AltName: Full=ITIM-containing receptor MAFA-L; AltName: Full=MAFA-like receptor; AltName: Full=Mast cell function-associated antigen	29.3	29.3	14%	3.9	28%	Q96E93.1
3	RecName: Full=Heat shock protein 75 kDa, mitochondrial; Short=HSP 75; AltName: Full=TNFR-associated protein 1; AltName: Full=Tumor necrosis factor type 1 receptor-associated protein; Short=TRAP-1; Flags: Precursor	30.0	30.0	8%	4.2	31%	Q12931.3
4	RecName: Full=Keratin, type II cuticular Hb1; AltName: Full=Hair keratin K2.9; AltName: Full=Keratin, hair, basic, 1; AltName: Full=Keratin-81; Short=K81; AltName: Full=Metastatic lymph node 137 gene protein; Short=MLN 137; AltName: Full=Type II hair keratin Hb1; AltName: Full=Type-II keratin Kb21; AltName: Full=ghHKb1; Short=ghHb1	29.6	29.6	7%	5.4	44%	Q14533.3
5	RecName: Full=Thrombospondin type-1 domain-containing protein 7A; Flags: Precursor	29.6	29.6	17%	5.5	28%	Q9UPZ6.4
6	RecName: Full=Breast cancer type 2 susceptibility protein; AltName: Full=Fanconi anemia group D1 protein	29.3	29.3	9%	7.8	25%	P51587.2
7	RecName: Full=WD repeat-containing protein mio	29.3	29.3	9%	7.9	34%	Q9NXC5.2

Descriptions

Sequences producing significant alignments:

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Alignments Download GenPept Graphics Distance tree of results Multiple alignment Show/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:
Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Max ident	Accession
[ ]	RecName: Full=ADP-ribosylation factor-like protein 2-binding protein-like protein; Short=ARF-like 2-binding protein-like protein; Short=ARL2BP-like protein	30.0	30.0	6%	2.0	44%	A8MYR8.1
[ ]	RecName: Full=Killer cell lectin-like receptor subfamily G member 1; AltName: Full=C-type lectin domain family 15 member A; AltName: Full=ITIM-containing receptor MAFA-L; AltName: Full=MAFA-like receptor; AltName: Full=Mast cell function-associated antigen	29.3	29.3	14%	3.9	28%	Q96E93.1
[ ]	RecName: Full=Heat shock protein 75 kDa, MITOCHONDRIAL; Short=HSP 75; AltName: Full=TNFR-associated protein 1; AltName: Full=Tumor necrosis factor type 1 receptor-associated protein; Short=TRAP-1; Flags: Precursor	30.0	30.0	8%	4.2	31%	Q12931.3
[ ]	RecName: Full=Keratin, type II cuticular Hb1; AltName: Full=Hair keratin K2.9; AltName: Full=Keratin, hair, basic, 1; AltName: Full=Keratin-81; Short=K81; AltName: Full=Metastatic lymph node 137 gene protein; Short=MLN 137; AltName: Full=Type II hair keratin Hb1; AltName: Full=Type-II keratin Kb21; AltName: Full=ghHKb1; Short=ghHb1	29.6	29.6	7%	5.4	44%	Q14533.3
[ ]	RecName: Full=Thrombospondin type-1 domain-containing protein 7A; Flags: Precursor	29.6	29.6	17%	5.5	28%	Q9UPZ6.4
[ ]	RecName: Full=Breast cancer type 2 susceptibility protein; AltName: Full=Fanconi anemia group D1 protein	29.3	29.3	9%	7.8	25%	P51587.2
[ ]	RecName: Full=WD repeat-containing protein mio	29.3	29.3	9%	7.9	34%	Q9NXC5.2

Alignments

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RecName: Full=ADP-ribosylation factor-like protein 2-binding protein-like protein; Short=ARF-like 2-binding protein-like protein; Short=ARL2BP-like protein

Sequence ID: sp|A8MYR8.1|AR2BL_HUMAN Length: 161 Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 86 to 117 GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps
30.0 bits(66)	2.0	Composition-based stats.	14/32(44%)	19/32(59%)	0/32(0%)

Query  230  GFGAMDFTTLQANKSEVPLDICTSICKYPDYI  261

            GF    FTTLQ +K EV  DI   + K+ D++

Sbjct  86   GFTMATFTTLQHHKDEVVGDILQMLLKFTDFL  117

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RecName: Full=Killer cell lectin-like receptor subfamily G member 1; AltName: Full=C-type lectin domain family 15 member A; AltName: Full=ITIM-containing receptor MAFA-L; AltName: Full=MAFA-like receptor; AltName: Full=Mast cell function-associated antigen

Sequence ID: sp|Q96E93.1|KLRG1_HUMAN Length: 195 Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 130 to 191 GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps
29.3 bits(64)	3.9	Compositional matrix adjust.	22/78(28%)	31/78(39%)	16/78(20%)

Query  182  LCLIGCKPPIGEHWGKGSPCNNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQA  241

             C IG +   G  W  GSP N   ++          N+ +Q         GA++   LQA

Sbjct  130  FCWIGLRNNSGWRWEDGSPLNFSRISS---------NSFVQTC-------GAINKNGLQA  173

Query  242  NKSEVPLDICTSICKYPD  259

            +  EVPL      C + D

Sbjct  174  SSCEVPLHWVCKKCPFAD  191

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RecName: Full=Heat shock protein 75 kDa, mitochondrial; Short=HSP 75; AltName: Full=TNFR-associated protein 1; AltName: Full=Tumor necrosis factor type 1 receptor-associated protein; Short=TRAP-1; Flags: Precursor

Sequence ID: sp|Q12931.3|TRAP1_HUMAN Length: 704 Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 475 to 525 GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps
30.0 bits(66)	4.2	Compositional matrix adjust.	16/51(31%)	25/51(49%)	5/51(9%)

Query  42   VPVSKVVSTDEYVART-----NIYYHAGTSRLLAVGHPYFPIKKPNNNKIL  87

            +P  ++ S  EY +R      NIYY    +R LA   PY+   K  + ++L

Sbjct  475  LPSGQLTSLSEYASRMRAGTRNIYYLCAPNRHLAEHSPYYEAMKKKDTEVL  525

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RecName: Full=Keratin, type II cuticular Hb1; AltName: Full=Hair keratin K2.9; AltName: Full=Keratin, hair, basic, 1; AltName: Full=Keratin-81; Short=K81; AltName: Full=Metastatic lymph node 137 gene protein; Short=MLN 137; AltName: Full=Type II hair keratin Hb1; AltName: Full=Type-II keratin Kb21; AltName: Full=ghHKb1; Short=ghHb1

Sequence ID: sp|Q14533.3|KRT81_HUMAN Length: 505 Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 440 to 476 GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps
29.6 bits(65)	5.4	Compositional matrix adjust.	17/39(44%)	22/39(56%)	3/39(7%)

Query  182  LCLIGCKPPIGEHWGKGSPCN-NVAVNPGDCPPLELINT  219

            LC+ G +P  G      +PCN NVAV+ G C P   +NT

Sbjct  440  LCVSGSRPVTGSVCS--APCNGNVAVSTGLCAPCGQLNT  476

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RecName: Full=Thrombospondin type-1 domain-containing protein 7A; Flags: Precursor

Sequence ID: sp|Q9UPZ6.4|THS7A_HUMAN Length: 1657 Number of Matches: 1

Related Information

Gene-associated gene details

Map Viewer-aligned genomic context

Range 1: 1321 to 1418 GenPept Graphics Next Match Previous Match

Alignment statistics for match #1
Score	Expect	Method	Identities	Positives	Gaps
29.6 bits(65)	5.5	Composition-based stats.	28/101(28%)	43/101(42%)	9/101(8%)

Query  168   DNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCNNVAVNPGDCPPLELINTVIQDGD--  225

             D R C S+   Q++ C +  KP     +G+ SPC       G+      I+ V+ DG

Sbjct  1321  DGRPCPSL-MDQSKPCPV--KPCYRWQYGQWSPCQVQEAQCGEGTRTRNISCVVSDGSAD  1377

Query  226   ----MVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIK  262

                 +VD  F A     +  NK+ V  + C+  C    Y+K

Sbjct  1378  DFSKVVDEEFCADIELIIDGNKNMVLEESCSQPCPGDCYLK  1418